Conservation of cofitness between b0779 and b4058 in Escherichia coli BW25113

About this page:
  • See if two genes have similar fitness patterns (high cofitness) across organisms.
  • To get to this page, search for a gene, visit the "Cofit" tab, and click on "compare".
  • To see the actual fitness patterns in one organism, click on the cofitness value. On that page, you can request a scatterplot.

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0779 uvrB excinuclease ABC subunit B (NCBI) 1.0 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.93 1
Shewanella oneidensis MR-1 0.75 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) 0.82 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.95 1
Shewanella sp. ANA-3 0.74 Shewana3_2166 excinuclease ABC subunit B (RefSeq) 0.82 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.75 1
Shewanella amazonensis SB2B 0.74 Sama_1828 excinuclease ABC subunit B (RefSeq) 0.82 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.84 1
Shewanella loihica PV-4 0.74 Shew_2064 excinuclease ABC subunit B (RefSeq) 0.82 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.94 1
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_21335 excinuclease ABC subunit B 0.78 AO356_14785 ABC-ATPase UvrA 0.98 1
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_52 Excinuclease ABC subunit B 0.78 Pf6N2E2_4888 Excinuclease ABC subunit A 0.95 1
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_20545 excinuclease ABC subunit B 0.78 AO353_06855 ABC-ATPase UvrA 0.89 1
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_26 Excinuclease ABC subunit B 0.78 Pf1N1B4_2611 Excinuclease ABC subunit A 0.69 2
Pseudomonas simiae WCS417 0.70 PS417_18685 excinuclease ABC subunit B 0.78 PS417_25395 excinuclease ABC subunit A 0.95 1
Pseudomonas fluorescens GW456-L13 0.70 PfGW456L13_3959 Excinuclease ABC subunit B 0.78 PfGW456L13_1283 Excinuclease ABC subunit A 0.61 1
Pseudomonas stutzeri RCH2 0.70 Psest_1296 excinuclease ABC, B subunit 0.76 Psest_3576 excinuclease ABC, A subunit 0.92 1
Pseudomonas putida KT2440 0.70 PP_1974 excinuclease UvrABC protein B 0.77 PP_0483 excinuclease (uvrABC system protein A)
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_2341 Excinuclease ABC subunit B 0.77 B158DRAFT_0885 excinuclease ABC, A subunit 0.99 1
Marinobacter adhaerens HP15 0.69 HP15_1372 excinuclease ABC subunit B 0.73 HP15_406 excinuclease ABC, ATPase subunit (A) 0.94 1
Dechlorosoma suillum PS 0.67 Dsui_2434 excinuclease ABC, B subunit 0.72 Dsui_1622 excinuclease ABC, A subunit 0.92 1
Cupriavidus basilensis 4G11 0.66 RR42_RS05995 excinuclease ABC subunit B 0.67 RR42_RS02145 excinuclease ABC subunit A 0.94 1
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS06905 excinuclease ABC subunit B 0.68 BPHYT_RS02970 excinuclease ABC subunit A low > 109
Acidovorax sp. GW101-3H11 0.64 Ac3H11_4114 Excinuclease ABC subunit B 0.64 Ac3H11_4387 Excinuclease ABC subunit A 0.49 51
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS15840 excinuclease ABC subunit B 0.67 HSERO_RS19810 excinuclease ABC subunit A 0.94 1
Azospirillum brasilense Sp245 0.61 AZOBR_RS16420 excinuclease ABC subunit B 0.58 AZOBR_RS15370 excinuclease ABC subunit A 0.86 1
Sphingomonas koreensis DSMZ 15582 0.59 Ga0059261_3779 Excinuclease ABC subunit B 0.59 Ga0059261_0674 excinuclease ABC, A subunit 0.97 1
Dinoroseobacter shibae DFL-12 0.59 Dshi_2192 excinuclease ABC, B subunit (RefSeq) 0.60 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.91 3
Phaeobacter inhibens BS107 0.59 PGA1_c26160 uvrABC system protein B 0.58 PGA1_c17370 uvrABC system protein A 0.92 1
Desulfovibrio vulgaris Miyazaki F 0.58 DvMF_0454 excinuclease ABC subunit B (RefSeq) 0.45 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.87 1
Synechococcus elongatus PCC 7942 0.57 Synpcc7942_0563 uvrB excinuclease ABC subunit B 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.87 1

Not shown: 0 genomes with orthologs for b0779 only; 1 genomes with orthologs for b4058 only