Outlier genes from Escherichia coli BW25113

About this page:
  • View genes that have different fitness in the two experiments: they are important for fitness in D-Lactate (C) but not in D-Glucose (C).
  • The most important genes in D-Lactate (C) are shown first.
  • To get to this page, use the outlier button when viewing the scatterplot comparing two experiments.
  • You can also view a heatmap of the top genes (link at bottom).

x > -1.0 and y < -1 and |x-y| > 1.0

x is fitness in set1IT003: D-Glucose carbon source
y is fitness in set1IT031: Sodium D-Lactate carbon source

83 genes found

gene name description x y
b4232 fbp fructose-1,6-bisphosphatase (NCBI) -0.2 -6.5
b1712 ihfA integration host factor subunit alpha (NCBI) -1.0 -5.8
b0080 fruR DNA-binding transcriptional dual regulator (NCBI) -0.5 -4.8
b2281 nuoI NADH dehydrogenase subunit I (NCBI) -0.4 -4.2
b2287 nuoB NADH dehydrogenase subunit B (NCBI) -0.2 -4.1
b2279 nuoK NADH dehydrogenase subunit K (NCBI) -0.1 -4.1
b2288 nuoA NADH dehydrogenase I chain A (VIMSS) -0.5 -4.0
b2283 nuoG NADH:ubiquinone oxidoreductase, chain G (RefSeq) -0.4 -3.9
b2285 nuoE NADH dehydrogenase subunit E (NCBI) -0.4 -3.6
b2282 nuoH NADH dehydrogenase subunit H (NCBI) -0.0 -3.6
b2276 nuoN NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) -0.5 -3.4
b2286 nuoC NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) -0.2 -3.4
b2278 nuoL NADH dehydrogenase subunit L (NCBI) -0.2 -3.4
b3603 lldP L-lactate permease (NCBI) -0.1 -3.4
b0688 pgm phosphoglucomutase (NCBI) -0.7 -3.3
b2284 nuoF NADH:ubiquinone oxidoreductase, chain F (NCBI) -0.4 -3.2
b2277 nuoM NADH dehydrogenase subunit M (NCBI) -0.4 -3.2
b3839 tatC TatABCE protein translocation system subunit (NCBI) -0.8 -3.0
b0723 sdhA succinate dehydrogenase flavoprotein subunit (NCBI) -0.1 -3.0
b3761 trpT tRNA-Trp (NCBI) -0.0 -2.9
b2297 pta phosphate acetyltransferase (NCBI) -0.9 -2.8
b1702 pps phosphoenolpyruvate synthase (NCBI) 0.0 -2.8
b2280 nuoJ NADH dehydrogenase subunit J (NCBI) -0.0 -2.7
b2168 fruK 1-phosphofructokinase (NCBI) -0.2 -2.7
b1257 yciE hypothetical protein (NCBI) -0.2 -2.7
b0721 sdhC succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) -0.1 -2.7
b3806 cyaA adenylate cyclase (NCBI) 0.4 -2.7
b2601 aroF 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible (NCBI) -0.6 -2.6
b0724 sdhB succinate dehydrogenase, FeS subunit (NCBI) -0.2 -2.5
b3755 yieP predicted transcriptional regulator (NCBI) -0.0 -2.5
b3993 thiE thiamine-phosphate pyrophosphorylase (NCBI) -0.7 -2.3
b0722 sdhD succinate dehydrogenase cytochrome b556 small membrane subunit (NCBI) -0.1 -2.3
b1859 znuB high-affinity zinc transporter membrane component (NCBI) -1.0 -2.2
b1476 fdnI formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) -0.1 -2.2
b4407 thiS sulfur carrier protein ThiS (NCBI) 0.1 -2.1
b1857 yebL putative adhesin (VIMSS) -0.6 -2.1
b2103 thiD phosphomethylpyrimidine kinase (NCBI) -0.5 -2.1
b0390 aroM hypothetical protein (NCBI) -0.1 -2.1
b3992 thiF thiamin biosynthesis, thiazole moiety (VIMSS) -0.6 -2.1
b3387 dam DNA adenine methylase (NCBI) 0.1 -2.0
b0334 prpD 2-methylcitrate dehydratase (NCBI) 0.0 -2.0
b3990 thiH thiamine biosynthesis protein ThiH (NCBI) -0.7 -2.0
b0564 appY DLP12 prophage; DNA-binding transcriptional activator (NCBI) -0.2 -2.0
b4410 ecnA entericidin A membrane lipoprotein, antidote entericidin B (NCBI) 0.1 -2.0
b0729 sucD succinyl-CoA synthetase subunit alpha (NCBI) -0.3 -1.8
b2189 proL tRNA-Pro (NCBI) -0.2 -1.8
b1984 asnW tRNA-Asn (NCBI) 0.3 -1.8
b1551 b1551 orf, hypothetical protein (VIMSS) -0.7 -1.7
b3630 rfaP kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) -0.5 -1.7
b4042 dgkA diacylglycerol kinase (NCBI) -0.5 -1.7
b3838 tatB sec-independent translocase (NCBI) -0.5 -1.7
b1273 yciN hypothetical protein (NCBI) -0.6 -1.7
b1333 uspE stress-induced protein (NCBI) 0.0 -1.7
b3994 thiC thiamine biosynthesis protein ThiC (NCBI) -0.6 -1.7
b2144 sanA hypothetical protein (NCBI) -0.7 -1.7
b1860 ruvB Holliday junction DNA helicase B (NCBI) -0.6 -1.7
b3991 thiG thiamin biosynthesis, thiazole moiety (VIMSS) -0.5 -1.6
b0677 nagA N-acetylglucosamine-6-phosphate deacetylase (NCBI) 0.1 -1.6
b3604 lldR DNA-binding transcriptional repressor (NCBI) 0.1 -1.6
b1836 yebV orf, hypothetical protein (VIMSS) -0.2 -1.5
b0676 nagC DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine (NCBI) 0.2 -1.5
b2392 mntH manganese transport protein MntH (NCBI) -0.2 -1.5
b0728 sucC succinyl-CoA synthetase subunit beta (NCBI) 0.1 -1.5
b3842 rfaH transcriptional activator RfaH (NCBI) -0.4 -1.5
b2133 dld D-lactate dehydrogenase, FAD-binding, NADH independent (NCBI) 0.1 -1.4
b0658 ybeX predicteed ion transport (NCBI) -0.2 -1.4
b4577 sgrS small antisense RNA (NCBI) -0.2 -1.4
b4651 yibW no description -0.3 -1.4
b1517 lsrF hypothetical protein (NCBI) 0.1 -1.3
b2082 ogrK DNA-binding transcriptional regulator prophage P2 remnant (NCBI) -0.2 -1.3
b1361 ydaW orf, hypothetical protein (VIMSS) 0.6 -1.3
b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) 0.1 -1.3
b4041 plsB glycerol-3-phosphate acyltransferase (VIMSS) -0.2 -1.3
b2579 yfiD pyruvate formate lyase subunit (NCBI) -0.1 -1.2
b0926 ycbK hypothetical protein (NCBI) -0.2 -1.2
b1187 fadR fatty acid metabolism regulator (NCBI) 0.0 -1.2
b2912 ygfA putative ligase (VIMSS) 0.2 -1.2
b0432 cyoA cytochrome o ubiquinol oxidase subunit II (NCBI) -0.2 -1.2
b1853 yebK predicted DNA-binding transcriptional regulator (NCBI) 0.6 -1.1
b3779 gpp guanosine pentaphosphatase/exopolyphosphatase (NCBI) -0.0 -1.1
b1346 ydaQ orf, hypothetical protein (VIMSS) 0.0 -1.1
b1724 ydiZ hypothetical protein (NCBI) 0.2 -1.1
b0798 ybiA hypothetical protein (NCBI) 0.2 -1.0

Heatmap for top 20 genes

Show scatterplot