Specific Phenotypes for Herbaspirillum seropedicae SmR1 in carbon source experiments

Condition Gene Description Fitness Cons.
D-Galactose HSERO_RS04225 permease -2.2  
D-Galactose HSERO_RS05155 2-dehydro-3-deoxy-6-phosphogalactonate aldolase -6.1 Yes
D-Galactose HSERO_RS05160 2-dehydro-3-deoxygalactonokinase -2.8 Yes
D-Galactose HSERO_RS22820 ArsR family transcriptional regulator 2.3  
D-Galacturonic Acid monohydrate HSERO_RS15785 5-dehydro-4-deoxyglucarate dehydratase -5.8 Yes
D-Galacturonic Acid monohydrate HSERO_RS15795 6-phosphogluconolactonase -4.1  
D-Galacturonic Acid monohydrate HSERO_RS15800 D-galactarate dehydratase -4.4 Yes
D-Galacturonic Acid monohydrate HSERO_RS15805 glucarate transporter -5.4 Yes
D-Galacturonic Acid monohydrate HSERO_RS23010 hexuronate transporter -3.9 Yes
D-Galacturonic Acid monohydrate HSERO_RS23040 NAD-dependent dehydratase -3.1 Yes
D-Glucose-6-Phosphate sodium salt HSERO_RS17870 glucokinase 1.2 Yes
D-Mannose HSERO_RS03630 fructose transporter -4.7  
D-Mannose HSERO_RS03640 D-ribose transporter ATP-binding protein -4.7  
D-Mannose HSERO_RS03645 ribose ABC transporter permease -3.4  
D-Mannose HSERO_RS03650 N-acyl-D-glucosamine 2-epimerase -4.8 Yes
D-Mannose HSERO_RS05860 biopolymer transporter ExbD 1.9  
D-Mannose HSERO_RS16340 transcriptional regulator 1.4  
D-Mannose HSERO_RS21415 lytic transglycosylase -2.0  
D-Mannose HSERO_RS22480 dihydroxy-acid dehydratase -3.5  
D-Ribose HSERO_RS05330 glucose dehydrogenase 2.0  
D-Ribose HSERO_RS08610 anhydrase -2.8  
D-Ribose HSERO_RS11480 LacI family transcriptional regulator -4.9 Yes
D-Ribose HSERO_RS11485 ribose ABC transporter ATPase -3.3 Yes
D-Ribose HSERO_RS11490 ABC transporter permease -5.0 Yes
D-Ribose HSERO_RS11500 ribokinase -6.0 Yes
D-Ribose HSERO_RS12295 histidine kinase -1.5  
D-Ribose HSERO_RS17135 peptide ABC transporter permease -1.3  
D-Ribose HSERO_RS17145 peptide ABC transporter substrate-binding protein -1.4  
D-Sorbitol HSERO_RS02190 sugar ABC transporter substrate-binding protein -3.7 Yes
D-Sorbitol HSERO_RS02195 sugar ABC transporter permease -3.2 Yes
D-Sorbitol HSERO_RS02200 mannitol ABC transporter permease -2.9 Yes
D-Sorbitol HSERO_RS02210 sugar ABC transporter ATP-binding protein -3.3 Yes
D-Sorbitol HSERO_RS02220 xylulokinase -4.0  
D-Sorbitol HSERO_RS14640 peptide chain release factor 3 -1.9  
D-Sorbitol HSERO_RS17000 sugar ABC transporter substrate-binding protein -2.3  
D-Sorbitol HSERO_RS17005 sugar ABC transporter permease -3.8  
D-Sorbitol HSERO_RS17015 sulfurtransferase -2.5  
D-Sorbitol HSERO_RS17020 sugar ABC transporter ATP-binding protein -2.7  
D-Sorbitol HSERO_RS17025 AraC family transcriptional regulator -4.6 Yes
D-Sorbitol HSERO_RS17030 xylulokinase 3.5  
D-Xylose HSERO_RS19330 FAH family protein -3.1  
D-Xylose HSERO_RS19360 fumarylacetoacetate hydrolase -4.1 Yes
Glycerol HSERO_RS04870 ABC transporter substrate-binding protein -2.3 Yes
L-Arabinose HSERO_RS05205 dihydroxy-acid dehydratase -3.1 Yes
L-Arabinose HSERO_RS05210 3-oxoacyl-ACP reductase -4.1 Yes
L-Arabinose HSERO_RS06870 cytochrome C biogenesis protein CcdA -3.9 Yes
L-Arabinose HSERO_RS06875 LysR family transcriptional regulator -4.0  
L-Asparagine HSERO_RS05895 Patatin 1.3  
L-Fucose HSERO_RS05235 fuconate dehydratase -2.6  
L-Fucose HSERO_RS05250 D-ribose transporter ATP binding protein -2.2  
L-Fucose HSERO_RS05255 ribose ABC transporter permease -1.8  
L-Fucose HSERO_RS05260 LacI family transcriptional regulator -1.9  
L-Malic acid disodium salt monohydrate HSERO_RS05850 exodeoxyribonuclease VII large subunit -1.5  
L-Malic acid disodium salt monohydrate HSERO_RS05920 endonuclease -2.7  
L-Proline HSERO_RS00865 AsnC family transcriptional regulator -5.8 Yes
L-Proline HSERO_RS00870 ABC transporter substrate-binding protein -6.2  
L-Proline HSERO_RS00875 hypothetical protein -3.1  
L-Proline HSERO_RS00880 ornithine cyclodeaminase -1.9  
L-Proline HSERO_RS00905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase -5.4 Yes
L-Proline HSERO_RS01975 4-hydroxybenzoate synthetase -1.5  
L-Rhamnose monohydrate HSERO_RS22200 L-fuculose kinase -3.0 Yes
L-Rhamnose monohydrate HSERO_RS22210 branched-chain amino acid ABC transporter permease -4.1 Yes
L-Rhamnose monohydrate HSERO_RS22220 D-ribose transporter ATP-binding protein -3.5 Yes
L-Rhamnose monohydrate HSERO_RS22230 DeoR faimly transcriptional regulator -4.3 Yes
L-Rhamnose monohydrate HSERO_RS22240 sugar isomerase -3.5 Yes
Sodium D,L-Lactate HSERO_RS02355 phosphoglucomutase -1.1  
Sodium D,L-Lactate HSERO_RS09950 chain-length determining protein -1.6  
Sodium D,L-Lactate HSERO_RS09955 chain-length determining protein -1.6  
Sodium D,L-Lactate HSERO_RS09995 N-acetylglucosaminyldiphospho-UDP N-acetyl-beta-D-mannosaminyltransferase -1.2  
Sodium D,L-Lactate HSERO_RS23885 XRE family transcriptional regulator 1.5  
Sodium D-Lactate HSERO_RS06025 histidine kinase -1.5  
Sodium D-Lactate HSERO_RS09950 chain-length determining protein -1.3  
Sodium D-Lactate HSERO_RS09955 chain-length determining protein -1.6  
Sodium D-Lactate HSERO_RS09995 N-acetylglucosaminyldiphospho-UDP N-acetyl-beta-D-mannosaminyltransferase -1.7  
Sodium D-Lactate HSERO_RS10000 mannose-1-phosphate guanylyltransferase -1.8  
Xylitol HSERO_RS05335 ribulokinase 1.6  
Xylitol HSERO_RS06485 filamentous hemagglutinin protein 1.2  
Xylitol HSERO_RS11220 hypothetical protein 1.3  
Xylitol HSERO_RS14640 peptide chain release factor 3 -1.6  
Xylitol HSERO_RS17000 sugar ABC transporter substrate-binding protein -2.0  
Xylitol HSERO_RS17010 sugar ABC transporter permease -2.5  
Xylitol HSERO_RS17015 sulfurtransferase -1.8 Yes
Xylitol HSERO_RS17020 sugar ABC transporter ATP-binding protein -4.1  
Xylitol HSERO_RS17025 AraC family transcriptional regulator -5.1  
Xylitol HSERO_RS17030 xylulokinase 5.9 Yes
a-Ketoglutaric acid disodium salt hydrate HSERO_RS06975 penicillin-binding protein 1A -2.0  
a-Ketoglutaric acid disodium salt hydrate HSERO_RS16810 Fis family transcriptional regulator -2.5 Yes
a-Ketoglutaric acid disodium salt hydrate HSERO_RS16815 C4-dicarboxylate ABC transporter -2.6 Yes
a-Ketoglutaric acid disodium salt hydrate HSERO_RS16820 alpha-ketoglutarate permease -2.9 Yes
m-Inositol HSERO_RS05460 LacI family transcription regulator -3.7  
m-Inositol HSERO_RS06135 malonic semialdehyde reductase -2.6  
m-Inositol HSERO_RS10360 hypothetical protein -1.7  
m-Inositol HSERO_RS12095 myo-inositol 2-dehydrogenase -5.4 Yes
m-Inositol HSERO_RS12110 sugar ABC transporter substrate-binding protein -6.7 Yes
m-Inositol HSERO_RS12115 ATPase -5.7 Yes
m-Inositol HSERO_RS12120 ABC transporter ATP-binding protein -6.4 Yes
m-Inositol HSERO_RS12125 5-dehydro-2-deoxygluconokinase -5.0 Yes
m-Inositol HSERO_RS12130 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase -4.9 Yes
m-Inositol HSERO_RS12135 xylose isomerase -8.5 Yes
m-Inositol HSERO_RS14845 stationary phase survival protein SurE -3.1  
m-Inositol HSERO_RS21420 5-formyltetrahydrofolate cyclo-ligase -4.1  
m-Inositol HSERO_RS23235 GntR family transcriptional regulator -1.1 Yes